Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0803152.3a with 2 members (WD repeat and fyve)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata /

... /

Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Euarchontoglires / Primates / Haplorrhini / Simiiformes / Catarrhini / Cercopithecidae / Colobinae /

Rhinopithecus

Completeness score: 1.00

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This HOG has 31 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0803152.3a	303	286	WD repeat and fyve
2	HOG:E0803152.3a.7b	66	43	WD repeat and fyve
3	HOG:E0803152.3b	60	130	WD repeat and fyve
4	HOG:E0803152.3a.6a	58	60	WD repeat and fyve
5	HOG:E0803152.3a.6a.2a	56	28	WD repeat and fyve
6	HOG:E0803152.3a.3a	31	16	WD repeat and fyve
7	HOG:E0803152.2b	11	6	WD repeat and fyve
8	HOG:E0803152	10	567	WD repeat and fyve
9	HOG:E0803152.3a.7b.5b	4	2	WD repeat and fyve
10	HOG:E0803152.3a.7b.5a	4	2	WD repeat and fyve
11	HOG:E0803152.3a.1a	4	2	WD repeat and fyve
12	HOG:E0803152.3a.4a	3	2	WD repeat and fyve
13	HOG:E0803152.4b.9c.8a.2a.11b.3a	2	2	WD repeat and fyve
14	HOG:E0803152.4b.9c	2	119	WD repeat and fyve
15	HOG:E0803152.3a.7b.6b	2	1	WD repeat and fyve
16	HOG:E0803152.3a.7b.6a	2	1	WD repeat and fyve
17	HOG:E0803152.3a.7b.4b	2	1	WD repeat and fyve
18	HOG:E0803152.3a.7b.4a	2	1	WD repeat and fyve
19	HOG:E0803152.3a.7b.3b	2	1	WD repeat and fyve
20	HOG:E0803152.3a.7b.3a	2	1	WD repeat and fyve
21	HOG:E0803152.3a.7a	2	1	WD repeat and fyve
22	HOG:E0803152.3a.6a.1b	2	1	WD repeat and fyve
23	HOG:E0803152.3a.6a.1a	2	1	WD repeat and fyve
24	HOG:E0803152.3a.5a	2	1	WD repeat and fyve
25	HOG:E0803152.3a.4b	2	1	WD repeat and fyve

Showing 1 to 25 of 31 rows rows per page